GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Taestivum_Traes_5BS_35CF05F82 Traes_5BS_35CF05F82	ta_iwgsc_5bs_v1_1694044	182	873	Phytozome	v2.2	Triticum_aestivum	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Taestivum_Traes_5BS_35CF05F82.1 Traes_5BS_35CF05F82.1 PAC:31930420	High	No	486		Get ORF Coding potential... Type: noncoding Potential: -0.810 Folding energies... MFEI: -24.486 AMFE: -0.567 GC content %: 43.210
Taestivum_Traes_5BS_35CF05F82.2 Traes_5BS_35CF05F82.2 PAC:31930421	High	No	412		Get ORF Coding potential... Type: noncoding Potential: -0.851 Folding energies... MFEI: -24.005 AMFE: -0.537 GC content %: 44.660

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).