Gene
Taestivum Traes 5BS 6D318FCF2
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
|---|---|---|---|---|---|---|---|
| Taestivum_Traes_5BS_6D318FCF2 Traes_5BS_6D318FCF2 |
ta_iwgsc_5bs_v1_2284866 | 614 | 6672 | Phytozome | v2.2 | Triticum_aestivum | Coding? Yes |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
|---|---|---|---|---|---|
| Taestivum_Traes_5BS_6D318FCF2.10 Traes_5BS_6D318FCF2.10 PAC:31780224 |
Low | No | 2458 | Get ORF Coding potential... Type: noncoding Potential: -0.029 Folding energies... MFEI: -29.203 AMFE: -0.616 GC content %: 47.437 | |
| Taestivum_Traes_5BS_6D318FCF2.12 Traes_5BS_6D318FCF2.12 PAC:31780221 |
Low | No | 2128 | Get ORF Coding potential... Type: noncoding Potential: -0.006 Folding energies... MFEI: -29.760 AMFE: -0.602 GC content %: 49.436 | |
| Taestivum_Traes_5BS_6D318FCF2.13 Traes_5BS_6D318FCF2.13 PAC:31780226 |
Low | No | 2590 | Get ORF Coding potential... Type: noncoding Potential: -0.007 Folding energies... MFEI: -29.212 AMFE: -0.601 GC content %: 48.610 | |
| Taestivum_Traes_5BS_6D318FCF2.14 Traes_5BS_6D318FCF2.14 PAC:31780227 |
High | No | 1087 | Get ORF Coding potential... Type: noncoding Potential: -0.707 Folding energies... MFEI: -34.499 AMFE: -0.547 GC content %: 63.017 | |
| Taestivum_Traes_5BS_6D318FCF2.15 Traes_5BS_6D318FCF2.15 PAC:31780228 |
Low | No | 1460 | Get ORF Coding potential... Type: noncoding Potential: -0.745 Folding energies... MFEI: -32.144 AMFE: -0.568 GC content %: 56.575 | |
| Taestivum_Traes_5BS_6D318FCF2.16 Traes_5BS_6D318FCF2.16 PAC:31780229 |
High | No | 1610 | Get ORF Coding potential... Type: noncoding Potential: -0.757 Folding energies... MFEI: -31.851 AMFE: -0.574 GC content %: 55.466 | |
| Taestivum_Traes_5BS_6D318FCF2.18 Traes_5BS_6D318FCF2.18 PAC:31780231 |
Low | No | 3008 | Get ORF Coding potential... Type: noncoding Potential: -0.826 Folding energies... MFEI: -28.780 AMFE: -0.618 GC content %: 46.543 | |
| Taestivum_Traes_5BS_6D318FCF2.2 Traes_5BS_6D318FCF2.2 PAC:31780214 |
Low | No | 2579 | Get ORF Coding potential... Type: noncoding Potential: -0.811 Folding energies... MFEI: -29.178 AMFE: -0.601 GC content %: 48.585 | |
| Taestivum_Traes_5BS_6D318FCF2.20 Traes_5BS_6D318FCF2.20 PAC:31780233 |
Low | No | 3782 | Get ORF Coding potential... Type: noncoding Potential: -0.053 Folding energies... MFEI: -28.154 AMFE: -0.625 GC content %: 45.029 | |
| Taestivum_Traes_5BS_6D318FCF2.21 Traes_5BS_6D318FCF2.21 PAC:31780236 |
Low | No | 2803 | Get ORF Coding potential... Type: noncoding Potential: -0.048 Folding energies... MFEI: -29.276 AMFE: -0.627 GC content %: 46.700 | |
| Taestivum_Traes_5BS_6D318FCF2.22 Traes_5BS_6D318FCF2.22 PAC:31780235 |
Low | No | 2910 | Get ORF Coding potential... Type: noncoding Potential: -0.052 Folding energies... MFEI: -28.976 AMFE: -0.626 GC content %: 46.323 | |
| Taestivum_Traes_5BS_6D318FCF2.24 Traes_5BS_6D318FCF2.24 PAC:31780239 |
Low | No | 2542 | Get ORF Coding potential... Type: noncoding Potential: -0.810 Folding energies... MFEI: -29.091 AMFE: -0.601 GC content %: 48.387 | |
| Taestivum_Traes_5BS_6D318FCF2.25 Traes_5BS_6D318FCF2.25 PAC:31780238 |
Low | No | 2460 | Get ORF Coding potential... Type: noncoding Potential: -0.002 Folding energies... MFEI: -29.972 AMFE: -0.608 GC content %: 49.268 | |
| Taestivum_Traes_5BS_6D318FCF2.26 Traes_5BS_6D318FCF2.26 PAC:31780237 |
Low | No | 2459 | Get ORF Coding potential... Type: noncoding Potential: -0.818 Folding energies... MFEI: -29.691 AMFE: -0.623 GC content %: 47.621 | |
| Taestivum_Traes_5BS_6D318FCF2.28 Traes_5BS_6D318FCF2.28 PAC:31780244 |
Low | No | 2936 | Get ORF Coding potential... Type: noncoding Potential: -0.030 Folding energies... MFEI: -28.270 AMFE: -0.629 GC content %: 44.959 | |
| Taestivum_Traes_5BS_6D318FCF2.29 Traes_5BS_6D318FCF2.29 PAC:31780240 |
Low | No | 2577 | Get ORF Coding potential... Type: noncoding Potential: -0.035 Folding energies... MFEI: -29.402 AMFE: -0.615 GC content %: 47.808 | |
| Taestivum_Traes_5BS_6D318FCF2.30 Traes_5BS_6D318FCF2.30 PAC:31780241 |
Low | No | 1909 | Get ORF Coding potential... Type: noncoding Potential: -0.778 Folding energies... MFEI: -30.964 AMFE: -0.588 GC content %: 52.645 | |
| Taestivum_Traes_5BS_6D318FCF2.32 Traes_5BS_6D318FCF2.32 PAC:31780245 |
Low | No | 2416 | Get ORF Coding potential... Type: noncoding Potential: -0.308 Folding energies... MFEI: -25.952 AMFE: -0.671 GC content %: 38.659 | |
| Taestivum_Traes_5BS_6D318FCF2.33 Traes_5BS_6D318FCF2.33 PAC:31780246 |
Low | No | 2258 | Get ORF Coding potential... Type: noncoding Potential: -0.378 Folding energies... MFEI: -26.125 AMFE: -0.662 GC content %: 39.460 | |
| Taestivum_Traes_5BS_6D318FCF2.34 Traes_5BS_6D318FCF2.34 PAC:31780247 |
Low | No | 2264 | Get ORF Coding potential... Type: noncoding Potential: -0.378 Folding energies... MFEI: -26.369 AMFE: -0.669 GC content %: 39.443 | |
| Taestivum_Traes_5BS_6D318FCF2.35 Traes_5BS_6D318FCF2.35 PAC:31780248 |
Low | No | 1330 | Get ORF Coding potential... Type: noncoding Potential: -1.270 Folding energies... MFEI: -24.970 AMFE: -0.644 GC content %: 38.797 | |
| Taestivum_Traes_5BS_6D318FCF2.36 Traes_5BS_6D318FCF2.36 PAC:31780249 |
Low | No | 803 | Get ORF Coding potential... Type: noncoding Potential: -1.242 Folding energies... MFEI: -25.965 AMFE: -0.626 GC content %: 41.469 | |
| Taestivum_Traes_5BS_6D318FCF2.37 Traes_5BS_6D318FCF2.37 PAC:31780250 |
Low | No | 1188 | Get ORF Coding potential... Type: noncoding Potential: -0.015 Folding energies... MFEI: -27.870 AMFE: -0.673 GC content %: 41.414 | |
| Taestivum_Traes_5BS_6D318FCF2.38 Traes_5BS_6D318FCF2.38 PAC:31780251 |
High | No | 1456 | Get ORF Coding potential... Type: noncoding Potential: -1.201 Folding energies... MFEI: -23.702 AMFE: -0.669 GC content %: 35.440 | |
| Taestivum_Traes_5BS_6D318FCF2.39 Traes_5BS_6D318FCF2.39 PAC:31780252 |
High | No | 1080 | Get ORF Coding potential... Type: noncoding Potential: -1.269 Folding energies... MFEI: -23.407 AMFE: -0.635 GC content %: 36.852 | |
| Taestivum_Traes_5BS_6D318FCF2.40 Traes_5BS_6D318FCF2.40 PAC:31780253 |
Low | No | 1549 | Get ORF Coding potential... Type: noncoding Potential: -1.113 Folding energies... MFEI: -26.081 AMFE: -0.653 GC content %: 39.961 | |
| Taestivum_Traes_5BS_6D318FCF2.41 Traes_5BS_6D318FCF2.41 PAC:31780254 |
High | No | 936 | Get ORF Coding potential... Type: noncoding Potential: -1.248 Folding energies... MFEI: -23.632 AMFE: -0.623 GC content %: 37.927 | |
| Taestivum_Traes_5BS_6D318FCF2.42 Traes_5BS_6D318FCF2.42 PAC:31780255 |
High | No | 1512 | Get ORF Coding potential... Type: noncoding Potential: -1.316 Folding energies... MFEI: -24.008 AMFE: -0.659 GC content %: 36.442 | |
| Taestivum_Traes_5BS_6D318FCF2.43 Traes_5BS_6D318FCF2.43 PAC:31780259 |
High | No | 1461 | Get ORF Coding potential... Type: noncoding Potential: -1.310 Folding energies... MFEI: -23.539 AMFE: -0.659 GC content %: 35.729 | |
| Taestivum_Traes_5BS_6D318FCF2.44 Traes_5BS_6D318FCF2.44 PAC:31780257 |
High | No | 2055 | Get ORF Coding potential... Type: noncoding Potential: -1.279 Folding energies... MFEI: -24.915 AMFE: -0.672 GC content %: 37.080 | |
| Taestivum_Traes_5BS_6D318FCF2.45 Traes_5BS_6D318FCF2.45 PAC:31780256 |
High | No | 1849 | Get ORF Coding potential... Type: noncoding Potential: -1.275 Folding energies... MFEI: -23.986 AMFE: -0.662 GC content %: 36.236 | |
| Taestivum_Traes_5BS_6D318FCF2.46 Traes_5BS_6D318FCF2.46 PAC:31780258 |
High | No | 1117 | Get ORF Coding potential... Type: noncoding Potential: -1.277 Folding energies... MFEI: -23.080 AMFE: -0.629 GC content %: 36.705 | |
| Taestivum_Traes_5BS_6D318FCF2.47 Traes_5BS_6D318FCF2.47 PAC:31780260 |
High | No | 2219 | Get ORF Coding potential... Type: noncoding Potential: -1.282 Folding energies... MFEI: -24.389 AMFE: -0.678 GC content %: 35.962 | |
| Taestivum_Traes_5BS_6D318FCF2.48 Traes_5BS_6D318FCF2.48 PAC:31780261 |
Low | No | 1761 | Get ORF Coding potential... Type: noncoding Potential: -1.300 Folding energies... MFEI: -25.389 AMFE: -0.650 GC content %: 39.069 | |
| Taestivum_Traes_5BS_6D318FCF2.5 Traes_5BS_6D318FCF2.5 PAC:31780217 |
Low | No | 1341 | Get ORF Coding potential... Type: noncoding Potential: -0.758 Folding energies... MFEI: -33.102 AMFE: -0.595 GC content %: 55.630 | |
| Taestivum_Traes_5BS_6D318FCF2.6 Traes_5BS_6D318FCF2.6 PAC:31780218 |
Low | No | 2541 | Get ORF Coding potential... Type: noncoding Potential: -0.005 Folding energies... MFEI: -29.099 AMFE: -0.602 GC content %: 48.327 | |
| Taestivum_Traes_5BS_6D318FCF2.9 Traes_5BS_6D318FCF2.9 PAC:31780223 |
Low | No | 2357 | Get ORF Coding potential... Type: noncoding Potential: -0.024 Folding energies... MFEI: -29.529 AMFE: -0.615 GC content %: 47.985 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
