GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Taestivum_Traes_5BS_736E9D9B4 Traes_5BS_736E9D9B4	ta_iwgsc_5bs_v1_2269210	250	4915	Phytozome	v2.2	Triticum_aestivum	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Taestivum_Traes_5BS_736E9D9B4.1 Traes_5BS_736E9D9B4.1 PAC:31939332	High	No	893		Get ORF Coding potential... Type: noncoding Potential: -0.915 Folding energies... MFEI: -31.512 AMFE: -0.711 GC content %: 44.345
Taestivum_Traes_5BS_736E9D9B4.2 Traes_5BS_736E9D9B4.2 PAC:31939331	High	No	932		Get ORF Coding potential... Type: noncoding Potential: -0.802 Folding energies... MFEI: -30.998 AMFE: -0.698 GC content %: 44.421

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).