Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
---|---|---|---|---|---|---|---|
Taestivum_Traes_5DL_028D0F6ED Traes_5DL_028D0F6ED |
ta_iwgsc_5dl_v1_4576023 | 39 | 4706 | Phytozome | v2.2 | Triticum_aestivum | Coding? Yes |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
---|---|---|---|---|---|
Taestivum_Traes_5DL_028D0F6ED.1 Traes_5DL_028D0F6ED.1 PAC:31919582 |
Low | No | 4032 | Get ORF Coding potential... Type: noncoding Potential: -0.593 Folding energies... MFEI: -36.228 AMFE: -0.679 GC content %: 53.373 | |
Taestivum_Traes_5DL_028D0F6ED.2 Traes_5DL_028D0F6ED.2 PAC:31919581 |
Low | No | 3732 | Get ORF Coding potential... Type: noncoding Potential: -0.586 Folding energies... MFEI: -36.742 AMFE: -0.675 GC content %: 54.421 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Taestivum_Traes_5DL_028D0F6ED.1 | RepBase (RepeatMasker) | 2014-01-31 | DEIMOS_TM | |
Taestivum_Traes_5DL_028D0F6ED.2 | RepBase (RepeatMasker) | 2014-01-31 | DEIMOS_TM |