GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Taestivum_Traes_5DL_178A0B0F5 Traes_5DL_178A0B0F5	ta_iwgsc_5dl_v1_4537294	281	2634	Phytozome	v2.2	Triticum_aestivum	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Taestivum_Traes_5DL_178A0B0F5.1 Traes_5DL_178A0B0F5.1 PAC:31959409	Low	No	255		Get ORF Coding potential... Type: noncoding Potential: -0.167 Folding energies... MFEI: -31.804 AMFE: -0.649 GC content %: 49.020
Taestivum_Traes_5DL_178A0B0F5.2 Traes_5DL_178A0B0F5.2 PAC:31959408	Low	No	255		Get ORF Coding potential... Type: noncoding Potential: -0.137 Folding energies... MFEI: -32.157 AMFE: -0.656 GC content %: 49.020
Taestivum_Traes_5DL_178A0B0F5.3 Traes_5DL_178A0B0F5.3 PAC:31959410	Low	No	1552		Get ORF Coding potential... Type: noncoding Potential: -0.452 Folding energies... MFEI: -27.023 AMFE: -0.669 GC content %: 40.399

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).