GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Taestivum_Traes_5DL_21090CF5B Traes_5DL_21090CF5B	ta_iwgsc_5dl_v1_4599188	1	10762	Phytozome	v2.2	Triticum_aestivum	Coding? Yes

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Taestivum_Traes_5DL_21090CF5B.10 Traes_5DL_21090CF5B.10 PAC:31917493	Low	No	295		Get ORF Coding potential... Type: noncoding Potential: -0.672 Folding energies... MFEI: -24.169 AMFE: -0.575 GC content %: 42.034
Taestivum_Traes_5DL_21090CF5B.9 Traes_5DL_21090CF5B.9 PAC:31917492	High	No	405		Get ORF Coding potential... Type: noncoding Potential: -0.863 Folding energies... MFEI: -24.815 AMFE: -0.568 GC content %: 43.704

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).