GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Taestivum_Traes_5DL_394155C08 Traes_5DL_394155C08	ta_iwgsc_5dl_v1_4575991	2	665	Phytozome	v2.2	Triticum_aestivum	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Taestivum_Traes_5DL_394155C08.1 Traes_5DL_394155C08.1 PAC:31743511	Low	No	410		Get ORF Coding potential... Type: noncoding Potential: -0.810 Folding energies... MFEI: -34.415 AMFE: -0.588 GC content %: 58.537
Taestivum_Traes_5DL_394155C08.2 Traes_5DL_394155C08.2 PAC:31743512	Low	No	510		Get ORF Coding potential... Type: noncoding Potential: -0.812 Folding energies... MFEI: -32.137 AMFE: -0.577 GC content %: 55.686

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).