GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Taestivum_Traes_5DL_459051A69 Traes_5DL_459051A69	ta_iwgsc_5dl_v1_3783434	4333	4796	Phytozome	v2.2	Triticum_aestivum	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Taestivum_Traes_5DL_459051A69.1 Traes_5DL_459051A69.1 PAC:31952483	High	No	249		Get ORF Coding potential... Type: noncoding Potential: -0.649 Folding energies... MFEI: -54.980 AMFE: -0.736 GC content %: 74.699
Taestivum_Traes_5DL_459051A69.2 Traes_5DL_459051A69.2 PAC:31952484	High	No	405		Get ORF Coding potential... Type: noncoding Potential: -1.027 Folding energies... MFEI: -40.074 AMFE: -0.657 GC content %: 60.988

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).