Gene
Taestivum Traes 5DL 4A322226E
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
|---|---|---|---|---|---|---|---|
| Taestivum_Traes_5DL_4A322226E Traes_5DL_4A322226E |
ta_iwgsc_5dl_v1_4514666 | 1266 | 5920 | Phytozome | v2.2 | Triticum_aestivum | Coding? Yes |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
|---|---|---|---|---|---|
| Taestivum_Traes_5DL_4A322226E.10 Traes_5DL_4A322226E.10 PAC:31794731 |
High | No | 1713 | Get ORF Coding potential... Type: noncoding Potential: -1.197 Folding energies... MFEI: -25.604 AMFE: -0.642 GC content %: 39.872 | |
| Taestivum_Traes_5DL_4A322226E.2 Traes_5DL_4A322226E.2 PAC:31794723 |
High | No | 1356 | Get ORF Coding potential... Type: noncoding Potential: -0.937 Folding energies... MFEI: -27.080 AMFE: -0.664 GC content %: 40.782 | |
| Taestivum_Traes_5DL_4A322226E.3 Traes_5DL_4A322226E.3 PAC:31794725 |
High | No | 814 | Get ORF Coding potential... Type: noncoding Potential: -0.779 Folding energies... MFEI: -31.351 AMFE: -0.682 GC content %: 45.946 | |
| Taestivum_Traes_5DL_4A322226E.4 Traes_5DL_4A322226E.4 PAC:31794724 |
High | No | 2006 | Get ORF Coding potential... Type: noncoding Potential: -0.884 Folding energies... MFEI: -25.708 AMFE: -0.628 GC content %: 40.927 | |
| Taestivum_Traes_5DL_4A322226E.5 Traes_5DL_4A322226E.5 PAC:31794730 |
High | No | 2565 | Get ORF Coding potential... Type: noncoding Potential: -0.904 Folding energies... MFEI: -25.388 AMFE: -0.644 GC content %: 39.415 | |
| Taestivum_Traes_5DL_4A322226E.6 Traes_5DL_4A322226E.6 PAC:31794727 |
High | No | 2071 | Get ORF Coding potential... Type: noncoding Potential: -0.887 Folding energies... MFEI: -26.296 AMFE: -0.651 GC content %: 40.367 | |
| Taestivum_Traes_5DL_4A322226E.7 Traes_5DL_4A322226E.7 PAC:31794729 |
High | No | 1343 | Get ORF Coding potential... Type: noncoding Potential: -0.844 Folding energies... MFEI: -26.411 AMFE: -0.633 GC content %: 41.698 | |
| Taestivum_Traes_5DL_4A322226E.8 Traes_5DL_4A322226E.8 PAC:31794726 |
High | No | 2015 | Get ORF Coding potential... Type: noncoding Potential: -0.871 Folding energies... MFEI: -25.747 AMFE: -0.653 GC content %: 39.454 | |
| Taestivum_Traes_5DL_4A322226E.9 Traes_5DL_4A322226E.9 PAC:31794728 |
High | No | 1352 | Get ORF Coding potential... Type: noncoding Potential: -0.827 Folding energies... MFEI: -26.516 AMFE: -0.632 GC content %: 41.938 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
