GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Taestivum_Traes_5DL_4BD0B3B93 Traes_5DL_4BD0B3B93	ta_iwgsc_5dl_v1_4514251	1166	2690	Phytozome	v2.2	Triticum_aestivum	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Taestivum_Traes_5DL_4BD0B3B93.1 Traes_5DL_4BD0B3B93.1 PAC:31954967	High	No	224		Get ORF Coding potential... Type: noncoding Potential: -0.967 Folding energies... MFEI: -20.938 AMFE: -0.510 GC content %: 41.071
Taestivum_Traes_5DL_4BD0B3B93.2 Traes_5DL_4BD0B3B93.2 PAC:31954969	High	No	916		Get ORF Coding potential... Type: noncoding Potential: -0.876 Folding energies... MFEI: -25.338 AMFE: -0.627 GC content %: 40.393
Taestivum_Traes_5DL_4BD0B3B93.3 Traes_5DL_4BD0B3B93.3 PAC:31954968	High	No	333		Get ORF Coding potential... Type: noncoding Potential: -0.844 Folding energies... MFEI: -25.465 AMFE: -0.589 GC content %: 43.243

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).