GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Taestivum_Traes_5DL_ACFBF1F42 Traes_5DL_ACFBF1F42	ta_iwgsc_5dl_v1_4488183	1	3042	Phytozome	v2.2	Triticum_aestivum	Coding? Yes

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Taestivum_Traes_5DL_ACFBF1F42.3 Traes_5DL_ACFBF1F42.3 PAC:31891246	High	No	384		Get ORF Coding potential... Type: noncoding Potential: -1.040 Folding energies... MFEI: -43.281 AMFE: -0.687 GC content %: 63.021
Taestivum_Traes_5DL_ACFBF1F42.4 Traes_5DL_ACFBF1F42.4 PAC:31891245	High	No	360		Get ORF Coding potential... Type: noncoding Potential: -0.590 Folding energies... MFEI: -39.000 AMFE: -0.621 GC content %: 62.778

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).