GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Taestivum_Traes_5DL_B87C26EA3 Traes_5DL_B87C26EA3	ta_iwgsc_5dl_v1_4528744	4613	6633	Phytozome	v2.2	Triticum_aestivum	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Taestivum_Traes_5DL_B87C26EA3.1 Traes_5DL_B87C26EA3.1 PAC:31853453	High	No	1348		Get ORF Coding potential... Type: noncoding Potential: -0.842 Folding energies... MFEI: -36.669 AMFE: -0.637 GC content %: 57.567
Taestivum_Traes_5DL_B87C26EA3.2 Traes_5DL_B87C26EA3.2 PAC:31853454	High	No	975		Get ORF Coding potential... Type: noncoding Potential: -1.019 Folding energies... MFEI: -39.036 AMFE: -0.657 GC content %: 59.385

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).