GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Taestivum_Traes_5DL_BFD22B015 Traes_5DL_BFD22B015	ta_iwgsc_5dl_v1_4529979	1023	1722	Phytozome	v2.2	Triticum_aestivum	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Taestivum_Traes_5DL_BFD22B015.1 Traes_5DL_BFD22B015.1 PAC:31770836	High	No	225		Get ORF Coding potential... Type: noncoding Potential: -0.760 Folding energies... MFEI: -41.467 AMFE: -0.618 GC content %: 67.111
Taestivum_Traes_5DL_BFD22B015.2 Traes_5DL_BFD22B015.2 PAC:31770837	High	No	695		Get ORF Coding potential... Type: noncoding Potential: -1.051 Folding energies... MFEI: -41.151 AMFE: -0.731 GC content %: 56.259

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).