Gene
Taestivum Traes 5DL C43D3E77B
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
|---|---|---|---|---|---|---|---|
| Taestivum_Traes_5DL_C43D3E77B Traes_5DL_C43D3E77B |
ta_iwgsc_5dl_v1_4608595 | 1107 | 6407 | Phytozome | v2.2 | Triticum_aestivum | Coding? Yes |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
|---|---|---|---|---|---|
| Taestivum_Traes_5DL_C43D3E77B.1 Traes_5DL_C43D3E77B.1 PAC:31849991 |
High | No | 1370 | Get ORF Coding potential... Type: noncoding Potential: -0.773 Folding energies... MFEI: -41.766 AMFE: -0.684 GC content %: 61.095 | |
| Taestivum_Traes_5DL_C43D3E77B.10 Traes_5DL_C43D3E77B.10 PAC:31849982 |
High | No | 1704 | Get ORF Coding potential... Type: noncoding Potential: -0.818 Folding energies... MFEI: -38.374 AMFE: -0.671 GC content %: 57.160 | |
| Taestivum_Traes_5DL_C43D3E77B.11 Traes_5DL_C43D3E77B.11 PAC:31849980 |
High | No | 1485 | Get ORF Coding potential... Type: noncoding Potential: -0.825 Folding energies... MFEI: -40.626 AMFE: -0.677 GC content %: 60.000 | |
| Taestivum_Traes_5DL_C43D3E77B.13 Traes_5DL_C43D3E77B.13 PAC:31849986 |
High | No | 1597 | Get ORF Coding potential... Type: noncoding Potential: -0.834 Folding energies... MFEI: -40.557 AMFE: -0.685 GC content %: 59.236 | |
| Taestivum_Traes_5DL_C43D3E77B.14 Traes_5DL_C43D3E77B.14 PAC:31849985 |
High | No | 1489 | Get ORF Coding potential... Type: noncoding Potential: -0.801 Folding energies... MFEI: -41.128 AMFE: -0.680 GC content %: 60.510 | |
| Taestivum_Traes_5DL_C43D3E77B.15 Traes_5DL_C43D3E77B.15 PAC:31849981 |
High | No | 1817 | Get ORF Coding potential... Type: noncoding Potential: -0.827 Folding energies... MFEI: -38.305 AMFE: -0.675 GC content %: 56.742 | |
| Taestivum_Traes_5DL_C43D3E77B.17 Traes_5DL_C43D3E77B.17 PAC:31849989 |
High | No | 1507 | Get ORF Coding potential... Type: noncoding Potential: -0.826 Folding energies... MFEI: -41.115 AMFE: -0.681 GC content %: 60.385 | |
| Taestivum_Traes_5DL_C43D3E77B.18 Traes_5DL_C43D3E77B.18 PAC:31849988 |
High | No | 710 | Get ORF Coding potential... Type: noncoding Potential: -1.197 Folding energies... MFEI: -36.775 AMFE: -0.663 GC content %: 55.493 | |
| Taestivum_Traes_5DL_C43D3E77B.19 Traes_5DL_C43D3E77B.19 PAC:31849987 |
High | No | 1522 | Get ORF Coding potential... Type: noncoding Potential: -0.804 Folding energies... MFEI: -41.071 AMFE: -0.678 GC content %: 60.578 | |
| Taestivum_Traes_5DL_C43D3E77B.20 Traes_5DL_C43D3E77B.20 PAC:31849990 |
High | No | 2170 | Get ORF Coding potential... Type: noncoding Potential: -0.904 Folding energies... MFEI: -35.198 AMFE: -0.664 GC content %: 53.041 | |
| Taestivum_Traes_5DL_C43D3E77B.7 Traes_5DL_C43D3E77B.7 PAC:31849977 |
High | No | 1600 | Get ORF Coding potential... Type: noncoding Potential: -0.835 Folding energies... MFEI: -40.625 AMFE: -0.682 GC content %: 59.562 | |
| Taestivum_Traes_5DL_C43D3E77B.8 Traes_5DL_C43D3E77B.8 PAC:31849978 |
High | No | 1893 | Get ORF Coding potential... Type: noncoding Potential: -0.857 Folding energies... MFEI: -37.908 AMFE: -0.678 GC content %: 55.890 | |
| Taestivum_Traes_5DL_C43D3E77B.9 Traes_5DL_C43D3E77B.9 PAC:31849979 |
High | No | 1759 | Get ORF Coding potential... Type: noncoding Potential: -0.847 Folding energies... MFEI: -37.732 AMFE: -0.674 GC content %: 55.998 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
