GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Taestivum_Traes_5DL_C81F2CFD8 Traes_5DL_C81F2CFD8	ta_iwgsc_5dl_v1_4604621	8143	13363	Phytozome	v2.2	Triticum_aestivum	Coding? Yes

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Taestivum_Traes_5DL_C81F2CFD8.12 Traes_5DL_C81F2CFD8.12 PAC:31886324	Low	No	1646		Get ORF Coding potential... Type: noncoding Potential: -0.882 Folding energies... MFEI: -28.985 AMFE: -0.607 GC content %: 47.752
Taestivum_Traes_5DL_C81F2CFD8.13 Traes_5DL_C81F2CFD8.13 PAC:31886326	Low	No	1926		Get ORF Coding potential... Type: noncoding Potential: -0.901 Folding energies... MFEI: -28.832 AMFE: -0.616 GC content %: 46.781
Taestivum_Traes_5DL_C81F2CFD8.4 Traes_5DL_C81F2CFD8.4 PAC:31886315	Low	No	1707		Get ORF Coding potential... Type: noncoding Potential: -0.887 Folding energies... MFEI: -28.670 AMFE: -0.611 GC content %: 46.924
Taestivum_Traes_5DL_C81F2CFD8.5 Traes_5DL_C81F2CFD8.5 PAC:31886316	Low	No	1870		Get ORF Coding potential... Type: noncoding Potential: -0.896 Folding energies... MFEI: -29.176 AMFE: -0.622 GC content %: 46.898

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).