Gene
Taestivum Traes 5DL C85A9E355
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
|---|---|---|---|---|---|---|---|
| Taestivum_Traes_5DL_C85A9E355 Traes_5DL_C85A9E355 |
ta_iwgsc_5dl_v1_4512024 | 569 | 6522 | Phytozome | v2.2 | Triticum_aestivum | Coding? Yes |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
|---|---|---|---|---|---|
| Taestivum_Traes_5DL_C85A9E355.1 Traes_5DL_C85A9E355.1 PAC:31930252 |
Low | No | 3733 | Get ORF Coding potential... Type: noncoding Potential: -0.278 Folding energies... MFEI: -24.867 AMFE: -0.621 GC content %: 40.021 | |
| Taestivum_Traes_5DL_C85A9E355.10 Traes_5DL_C85A9E355.10 PAC:31930249 |
Low | No | 4702 | Get ORF Coding potential... Type: noncoding Potential: -0.228 Folding energies... MFEI: -27.220 AMFE: -0.629 GC content %: 43.258 | |
| Taestivum_Traes_5DL_C85A9E355.11 Traes_5DL_C85A9E355.11 PAC:31930250 |
Low | No | 3419 | Get ORF Coding potential... Type: noncoding Potential: -0.195 Folding energies... MFEI: -24.811 AMFE: -0.633 GC content %: 39.193 | |
| Taestivum_Traes_5DL_C85A9E355.12 Traes_5DL_C85A9E355.12 PAC:31930251 |
Low | No | 4333 | Get ORF Coding potential... Type: noncoding Potential: -0.218 Folding energies... MFEI: -24.736 AMFE: -0.625 GC content %: 39.557 | |
| Taestivum_Traes_5DL_C85A9E355.2 Traes_5DL_C85A9E355.2 PAC:31930241 |
Low | No | 4449 | Get ORF Coding potential... Type: noncoding Potential: -0.225 Folding energies... MFEI: -24.898 AMFE: -0.633 GC content %: 39.335 | |
| Taestivum_Traes_5DL_C85A9E355.3 Traes_5DL_C85A9E355.3 PAC:31930242 |
Low | No | 5077 | Get ORF Coding potential... Type: noncoding Potential: -0.232 Folding energies... MFEI: -27.317 AMFE: -0.639 GC content %: 42.722 | |
| Taestivum_Traes_5DL_C85A9E355.5 Traes_5DL_C85A9E355.5 PAC:31930244 |
Low | No | 2701 | Get ORF Coding potential... Type: noncoding Potential: -0.173 Folding energies... MFEI: -24.139 AMFE: -0.619 GC content %: 39.023 | |
| Taestivum_Traes_5DL_C85A9E355.6 Traes_5DL_C85A9E355.6 PAC:31930245 |
Low | No | 3890 | Get ORF Coding potential... Type: noncoding Potential: -0.211 Folding energies... MFEI: -25.447 AMFE: -0.637 GC content %: 39.923 | |
| Taestivum_Traes_5DL_C85A9E355.7 Traes_5DL_C85A9E355.7 PAC:31930247 |
Low | No | 3466 | Get ORF Coding potential... Type: noncoding Potential: -0.269 Folding energies... MFEI: -24.769 AMFE: -0.616 GC content %: 40.190 | |
| Taestivum_Traes_5DL_C85A9E355.8 Traes_5DL_C85A9E355.8 PAC:31930248 |
Low | No | 4281 | Get ORF Coding potential... Type: noncoding Potential: -0.054 Folding energies... MFEI: -24.898 AMFE: -0.630 GC content %: 39.547 | |
| Taestivum_Traes_5DL_C85A9E355.9 Traes_5DL_C85A9E355.9 PAC:31930246 |
Low | No | 3169 | Get ORF Coding potential... Type: noncoding Potential: -0.257 Folding energies... MFEI: -24.983 AMFE: -0.610 GC content %: 40.959 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
