Gene
Taestivum Traes 5DL CA37BBB0C
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
|---|---|---|---|---|---|---|---|
| Taestivum_Traes_5DL_CA37BBB0C Traes_5DL_CA37BBB0C |
ta_iwgsc_5dl_v1_3783434 | 60 | 3499 | Phytozome | v2.2 | Triticum_aestivum | Coding? Yes |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
|---|---|---|---|---|---|
| Taestivum_Traes_5DL_CA37BBB0C.10 Traes_5DL_CA37BBB0C.10 PAC:31952478 |
High | No | 1362 | Get ORF Coding potential... Type: noncoding Potential: -0.688 Folding energies... MFEI: -36.601 AMFE: -0.734 GC content %: 49.853 | |
| Taestivum_Traes_5DL_CA37BBB0C.11 Traes_5DL_CA37BBB0C.11 PAC:31952479 |
High | No | 1593 | Get ORF Coding potential... Type: noncoding Potential: -0.724 Folding energies... MFEI: -34.036 AMFE: -0.716 GC content %: 47.520 | |
| Taestivum_Traes_5DL_CA37BBB0C.12 Traes_5DL_CA37BBB0C.12 PAC:31952482 |
High | No | 1664 | Get ORF Coding potential... Type: noncoding Potential: -0.696 Folding energies... MFEI: -33.708 AMFE: -0.717 GC content %: 46.995 | |
| Taestivum_Traes_5DL_CA37BBB0C.8 Traes_5DL_CA37BBB0C.8 PAC:31952480 |
High | No | 1601 | Get ORF Coding potential... Type: noncoding Potential: -0.999 Folding energies... MFEI: -33.435 AMFE: -0.725 GC content %: 46.096 | |
| Taestivum_Traes_5DL_CA37BBB0C.9 Traes_5DL_CA37BBB0C.9 PAC:31952481 |
High | No | 1155 | Get ORF Coding potential... Type: noncoding Potential: -0.962 Folding energies... MFEI: -34.701 AMFE: -0.721 GC content %: 48.139 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
