Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
---|---|---|---|---|---|---|---|
Taestivum_Traes_5DL_DCF0015D4 Traes_5DL_DCF0015D4 |
ta_iwgsc_5dl_v1_4511960 | 1 | 5925 | Phytozome | v2.2 | Triticum_aestivum | Coding? Yes |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
---|---|---|---|---|---|
Taestivum_Traes_5DL_DCF0015D4.1 Traes_5DL_DCF0015D4.1 PAC:31943024 |
High | No | 212 | Get ORF Coding potential... Type: noncoding Potential: -0.988 Folding energies... MFEI: -33.491 AMFE: -0.612 GC content %: 54.717 | |
Taestivum_Traes_5DL_DCF0015D4.2 Traes_5DL_DCF0015D4.2 PAC:31943021 |
High | No | 1451 | Get ORF Coding potential... Type: noncoding Potential: -1.121 Folding energies... MFEI: -28.408 AMFE: -0.656 GC content %: 43.280 | |
Taestivum_Traes_5DL_DCF0015D4.4 Traes_5DL_DCF0015D4.4 PAC:31943023 |
High | No | 1367 | Get ORF Coding potential... Type: noncoding Potential: -1.112 Folding energies... MFEI: -28.574 AMFE: -0.663 GC content %: 43.087 | |
Taestivum_Traes_5DL_DCF0015D4.5 Traes_5DL_DCF0015D4.5 PAC:31943020 |
High | No | 1396 | Get ORF Coding potential... Type: noncoding Potential: -1.115 Folding energies... MFEI: -28.059 AMFE: -0.653 GC content %: 42.980 | |
Taestivum_Traes_5DL_DCF0015D4.6 Traes_5DL_DCF0015D4.6 PAC:31943022 |
High | No | 1430 | Get ORF Coding potential... Type: noncoding Potential: -1.119 Folding energies... MFEI: -28.217 AMFE: -0.651 GC content %: 43.357 |