GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Taestivum_Traes_5DL_DE6655871 Traes_5DL_DE6655871	ta_iwgsc_5dl_v1_4583112	3837	7980	Phytozome	v2.2	Triticum_aestivum	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Taestivum_Traes_5DL_DE6655871.1 Traes_5DL_DE6655871.1 PAC:31998463	High	No	1059		Get ORF Coding potential... Type: noncoding Potential: -0.043 Folding energies... MFEI: -22.710 AMFE: -0.554 GC content %: 40.982
Taestivum_Traes_5DL_DE6655871.2 Traes_5DL_DE6655871.2 PAC:31998462	High	No	1051		Get ORF Coding potential... Type: noncoding Potential: -0.041 Folding energies... MFEI: -22.816 AMFE: -0.553 GC content %: 41.294
Taestivum_Traes_5DL_DE6655871.3 Traes_5DL_DE6655871.3 PAC:31998464	High	No	1098		Get ORF Coding potential... Type: noncoding Potential: -0.177 Folding energies... MFEI: -23.315 AMFE: -0.569 GC content %: 40.984
Taestivum_Traes_5DL_DE6655871.4 Traes_5DL_DE6655871.4 PAC:31998465	High	No	760		Get ORF Coding potential... Type: noncoding Potential: -1.151 Folding energies... MFEI: -25.105 AMFE: -0.621 GC content %: 40.395

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).