GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Taestivum_Traes_5DL_F4BF5E91E Traes_5DL_F4BF5E91E	ta_iwgsc_5dl_v1_4513161	7506	9310	Phytozome	v2.2	Triticum_aestivum	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Taestivum_Traes_5DL_F4BF5E91E.1 Traes_5DL_F4BF5E91E.1 PAC:31960403	Low	No	325		Get ORF Coding potential... Type: noncoding Potential: -0.945 Folding energies... MFEI: -28.615 AMFE: -0.578 GC content %: 49.538
Taestivum_Traes_5DL_F4BF5E91E.2 Traes_5DL_F4BF5E91E.2 PAC:31960402	Low	No	667		Get ORF Coding potential... Type: noncoding Potential: -0.655 Folding energies... MFEI: -28.786 AMFE: -0.662 GC content %: 43.478

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).