GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Taestivum_Traes_5DL_FAD2E5AE6 Traes_5DL_FAD2E5AE6	ta_iwgsc_5dl_v1_1576684	4	1709	Phytozome	v2.2	Triticum_aestivum	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Taestivum_Traes_5DL_FAD2E5AE6.1 Traes_5DL_FAD2E5AE6.1 PAC:31933145	Low	No	1069		Get ORF Coding potential... Type: noncoding Potential: -0.572 Folding energies... MFEI: -28.896 AMFE: -0.614 GC content %: 47.053
Taestivum_Traes_5DL_FAD2E5AE6.2 Traes_5DL_FAD2E5AE6.2 PAC:31933146	High	No	1441		Get ORF Coding potential... Type: noncoding Potential: -0.934 Folding energies... MFEI: -27.488 AMFE: -0.606 GC content %: 45.385

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).