Gene
Taestivum Traes 5DS 09D2A316C
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
|---|---|---|---|---|---|---|---|
| Taestivum_Traes_5DS_09D2A316C Traes_5DS_09D2A316C |
ta_iwgsc_5ds_v1_1405847 | 583 | 3124 | Phytozome | v2.2 | Triticum_aestivum | Coding? Yes |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
|---|---|---|---|---|---|
| Taestivum_Traes_5DS_09D2A316C.5 Traes_5DS_09D2A316C.5 PAC:31992060 |
Low | No | 1119 | Get ORF Coding potential... Type: noncoding Potential: -0.810 Folding energies... MFEI: -30.223 AMFE: -0.663 GC content %: 45.576 | |
| Taestivum_Traes_5DS_09D2A316C.6 Traes_5DS_09D2A316C.6 PAC:31992061 |
Low | No | 753 | Get ORF Coding potential... Type: noncoding Potential: -0.761 Folding energies... MFEI: -27.065 AMFE: -0.668 GC content %: 40.505 | |
| Taestivum_Traes_5DS_09D2A316C.7 Traes_5DS_09D2A316C.7 PAC:31992062 |
Low | No | 747 | Get ORF Coding potential... Type: noncoding Potential: -0.606 Folding energies... MFEI: -32.316 AMFE: -0.640 GC content %: 50.469 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
