Gene
Taestivum Traes 5DS 1DD805DCE
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
|---|---|---|---|---|---|---|---|
| Taestivum_Traes_5DS_1DD805DCE Traes_5DS_1DD805DCE |
ta_iwgsc_5ds_v1_2782419 | 8215 | 11017 | Phytozome | v2.2 | Triticum_aestivum | Coding? Yes |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
|---|---|---|---|---|---|
| Taestivum_Traes_5DS_1DD805DCE.10 Traes_5DS_1DD805DCE.10 PAC:31890236 |
High | No | 1404 | Get ORF Coding potential... Type: noncoding Potential: -0.291 Folding energies... MFEI: -37.450 AMFE: -0.686 GC content %: 54.558 | |
| Taestivum_Traes_5DS_1DD805DCE.11 Traes_5DS_1DD805DCE.11 PAC:31890235 |
High | No | 1393 | Get ORF Coding potential... Type: noncoding Potential: -0.290 Folding energies... MFEI: -37.566 AMFE: -0.689 GC content %: 54.559 | |
| Taestivum_Traes_5DS_1DD805DCE.12 Traes_5DS_1DD805DCE.12 PAC:31890237 |
Low | Yes | 528 | Get ORF Coding potential... Type: noncoding Potential: -0.396 Folding energies... MFEI: -34.981 AMFE: -0.512 GC content %: 68.371 | |
| Taestivum_Traes_5DS_1DD805DCE.13 Traes_5DS_1DD805DCE.13 PAC:31890238 |
Low | Yes | 638 | Get ORF Coding potential... Type: noncoding Potential: -0.278 Folding energies... MFEI: -35.564 AMFE: -0.544 GC content %: 65.361 | |
| Taestivum_Traes_5DS_1DD805DCE.5 Traes_5DS_1DD805DCE.5 PAC:31890232 |
High | No | 928 | Get ORF Coding potential... Type: noncoding Potential: -0.242 Folding energies... MFEI: -38.728 AMFE: -0.677 GC content %: 57.220 | |
| Taestivum_Traes_5DS_1DD805DCE.6 Traes_5DS_1DD805DCE.6 PAC:31890234 |
Low | Yes | 1313 | Get ORF Coding potential... Type: noncoding Potential: -0.282 Folding energies... MFEI: -37.837 AMFE: -0.691 GC content %: 54.760 | |
| Taestivum_Traes_5DS_1DD805DCE.7 Traes_5DS_1DD805DCE.7 PAC:31890231 |
High | No | 1412 | Get ORF Coding potential... Type: noncoding Potential: -0.292 Folding energies... MFEI: -37.521 AMFE: -0.687 GC content %: 54.603 | |
| Taestivum_Traes_5DS_1DD805DCE.8 Traes_5DS_1DD805DCE.8 PAC:31890233 |
High | No | 1403 | Get ORF Coding potential... Type: noncoding Potential: -0.291 Folding energies... MFEI: -37.434 AMFE: -0.686 GC content %: 54.597 | |
| Taestivum_Traes_5DS_1DD805DCE.9 Traes_5DS_1DD805DCE.9 PAC:31890230 |
High | No | 1630 | Get ORF Coding potential... Type: noncoding Potential: -0.310 Folding energies... MFEI: -35.675 AMFE: -0.684 GC content %: 52.147 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
