GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Taestivum_Traes_5DS_40DFA251E Traes_5DS_40DFA251E	ta_iwgsc_5ds_v1_2743877	2243	5528	Phytozome	v2.2	Triticum_aestivum	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Taestivum_Traes_5DS_40DFA251E.1 Traes_5DS_40DFA251E.1 PAC:31969397	High	No	432		Get ORF Coding potential... Type: noncoding Potential: -1.074 Folding energies... MFEI: -25.509 AMFE: -0.644 GC content %: 39.583
Taestivum_Traes_5DS_40DFA251E.2 Traes_5DS_40DFA251E.2 PAC:31969396	High	No	1281		Get ORF Coding potential... Type: noncoding Potential: -1.151 Folding energies... MFEI: -23.669 AMFE: -0.652 GC content %: 36.300
Taestivum_Traes_5DS_40DFA251E.3 Traes_5DS_40DFA251E.3 PAC:31969398	High	No	1261		Get ORF Coding potential... Type: noncoding Potential: -1.150 Folding energies... MFEI: -23.291 AMFE: -0.644 GC content %: 36.162

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).