Gene
Taestivum Traes 5DS 676084076
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
|---|---|---|---|---|---|---|---|
| Taestivum_Traes_5DS_676084076 Traes_5DS_676084076 |
ta_iwgsc_5ds_v1_2730220 | 5809 | 9585 | Phytozome | v2.2 | Triticum_aestivum | Coding? No |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
|---|---|---|---|---|---|
| Taestivum_Traes_5DS_676084076.1 Traes_5DS_676084076.1 PAC:31744482 |
High | No | 954 | Get ORF Coding potential... Type: noncoding Potential: -0.696 Folding energies... MFEI: -30.377 AMFE: -0.657 GC content %: 46.226 | |
| Taestivum_Traes_5DS_676084076.2 Traes_5DS_676084076.2 PAC:31744483 |
High | No | 938 | Get ORF Coding potential... Type: noncoding Potential: -0.692 Folding energies... MFEI: -30.885 AMFE: -0.637 GC content %: 48.507 | |
| Taestivum_Traes_5DS_676084076.3 Traes_5DS_676084076.3 PAC:31744484 |
High | No | 1207 | Get ORF Coding potential... Type: noncoding Potential: -0.739 Folding energies... MFEI: -29.577 AMFE: -0.681 GC content %: 43.413 | |
| Taestivum_Traes_5DS_676084076.4 Traes_5DS_676084076.4 PAC:31744485 |
High | No | 225 | Get ORF Coding potential... Type: noncoding Potential: -0.338 Folding energies... MFEI: -35.600 AMFE: -0.568 GC content %: 62.667 | |
| Taestivum_Traes_5DS_676084076.5 Traes_5DS_676084076.5 PAC:31744486 |
High | No | 1687 | Get ORF Coding potential... Type: noncoding Potential: -1.273 Folding energies... MFEI: -26.420 AMFE: -0.696 GC content %: 37.937 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
