Gene
Taestivum Traes 5DS 7C3E8B2F2
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
|---|---|---|---|---|---|---|---|
| Taestivum_Traes_5DS_7C3E8B2F2 Traes_5DS_7C3E8B2F2 |
ta_iwgsc_5ds_v1_2722709 | 1150 | 3783 | Phytozome | v2.2 | Triticum_aestivum | Coding? No |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
|---|---|---|---|---|---|
| Taestivum_Traes_5DS_7C3E8B2F2.1 Traes_5DS_7C3E8B2F2.1 PAC:31826747 |
High | No | 1486 | Get ORF Coding potential... Type: noncoding Potential: -0.800 Folding energies... MFEI: -29.704 AMFE: -0.519 GC content %: 57.268 | |
| Taestivum_Traes_5DS_7C3E8B2F2.2 Traes_5DS_7C3E8B2F2.2 PAC:31826745 |
High | No | 1534 | Get ORF Coding potential... Type: noncoding Potential: -0.607 Folding energies... MFEI: -30.463 AMFE: -0.526 GC content %: 57.888 | |
| Taestivum_Traes_5DS_7C3E8B2F2.3 Traes_5DS_7C3E8B2F2.3 PAC:31826746 |
High | No | 1477 | Get ORF Coding potential... Type: noncoding Potential: -0.799 Folding energies... MFEI: -29.736 AMFE: -0.518 GC content %: 57.414 | |
| Taestivum_Traes_5DS_7C3E8B2F2.4 Traes_5DS_7C3E8B2F2.4 PAC:31826748 |
High | No | 1299 | Get ORF Coding potential... Type: noncoding Potential: -0.807 Folding energies... MFEI: -28.814 AMFE: -0.555 GC content %: 51.886 | |
| Taestivum_Traes_5DS_7C3E8B2F2.5 Traes_5DS_7C3E8B2F2.5 PAC:31826749 |
High | No | 1145 | Get ORF Coding potential... Type: noncoding Potential: -0.754 Folding energies... MFEI: -29.092 AMFE: -0.549 GC content %: 53.013 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
