GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Taestivum_Traes_5DS_C0B23B9AC Traes_5DS_C0B23B9AC	ta_iwgsc_5ds_v1_2709840	4	2612	Phytozome	v2.2	Triticum_aestivum	Coding? Yes

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Taestivum_Traes_5DS_C0B23B9AC.1 Traes_5DS_C0B23B9AC.1 PAC:31901239	Low	No	1001		Get ORF Coding potential... Type: noncoding Potential: -0.946 Folding energies... MFEI: -31.818 AMFE: -0.617 GC content %: 51.548
Taestivum_Traes_5DS_C0B23B9AC.3 Traes_5DS_C0B23B9AC.3 PAC:31901241	Low	No	1478		Get ORF Coding potential... Type: noncoding Potential: -1.021 Folding energies... MFEI: -29.993 AMFE: -0.650 GC content %: 46.143
Taestivum_Traes_5DS_C0B23B9AC.4 Traes_5DS_C0B23B9AC.4 PAC:31901242	Low	No	654		Get ORF Coding potential... Type: noncoding Potential: -0.908 Folding energies... MFEI: -33.654 AMFE: -0.620 GC content %: 54.281
Taestivum_Traes_5DS_C0B23B9AC.5 Traes_5DS_C0B23B9AC.5 PAC:31901243	Low	No	590		Get ORF Coding potential... Type: noncoding Potential: -1.004 Folding energies... MFEI: -34.220 AMFE: -0.631 GC content %: 54.237

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).