Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
---|---|---|---|---|---|---|---|
Taestivum_Traes_5DS_ED8F03390 Traes_5DS_ED8F03390 |
ta_iwgsc_5ds_v1_2756394 | 3723 | 6497 | Phytozome | v2.2 | Triticum_aestivum | Coding? Yes |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
---|---|---|---|---|---|
Taestivum_Traes_5DS_ED8F03390.13 Traes_5DS_ED8F03390.13 PAC:32019584 |
Low | Yes | 1675 | Get ORF Coding potential... Type: noncoding Potential: -0.606 Folding energies... MFEI: -31.851 AMFE: -0.710 GC content %: 44.836 | |
Taestivum_Traes_5DS_ED8F03390.14 Traes_5DS_ED8F03390.14 PAC:32019585 |
Low | Yes | 1962 | Get ORF Coding potential... Type: noncoding Potential: -0.767 Folding energies... MFEI: -30.872 AMFE: -0.696 GC content %: 44.343 | |
Taestivum_Traes_5DS_ED8F03390.15 Traes_5DS_ED8F03390.15 PAC:32019586 |
High | No | 952 | Get ORF Coding potential... Type: noncoding Potential: -0.776 Folding energies... MFEI: -30.536 AMFE: -0.686 GC content %: 44.538 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Taestivum_Traes_5DS_ED8F03390.13 | Rfam | 11.0 | MIR1122 | 6.7e-13 |
Taestivum_Traes_5DS_ED8F03390.14 | Rfam | 11.0 | MIR1122 | 7.8e-13 |