Gene
Taestivum Traes 6AL 4C35F955D
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
|---|---|---|---|---|---|---|---|
| Taestivum_Traes_6AL_4C35F955D Traes_6AL_4C35F955D |
ta_iwgsc_6al_v1_5795779 | 840 | 17299 | Phytozome | v2.2 | Triticum_aestivum | Coding? No |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
|---|---|---|---|---|---|
| Taestivum_Traes_6AL_4C35F955D.1 Traes_6AL_4C35F955D.1 PAC:31964017 |
Low | No | 689 | Get ORF Coding potential... Type: noncoding Potential: -0.891 Folding energies... MFEI: -42.743 AMFE: -0.671 GC content %: 63.716 | |
| Taestivum_Traes_6AL_4C35F955D.10 Traes_6AL_4C35F955D.10 PAC:31964025 |
Low | No | 1040 | Get ORF Coding potential... Type: noncoding Potential: -1.093 Folding energies... MFEI: -37.365 AMFE: -0.698 GC content %: 53.558 | |
| Taestivum_Traes_6AL_4C35F955D.2 Traes_6AL_4C35F955D.2 PAC:31964016 |
Low | No | 1658 | Get ORF Coding potential... Type: noncoding Potential: -0.902 Folding energies... MFEI: -38.673 AMFE: -0.692 GC content %: 55.911 | |
| Taestivum_Traes_6AL_4C35F955D.3 Traes_6AL_4C35F955D.3 PAC:31964018 |
Low | No | 1568 | Get ORF Coding potential... Type: noncoding Potential: -0.847 Folding energies... MFEI: -38.737 AMFE: -0.697 GC content %: 55.548 | |
| Taestivum_Traes_6AL_4C35F955D.4 Traes_6AL_4C35F955D.4 PAC:31964021 |
High | No | 604 | Get ORF Coding potential... Type: noncoding Potential: -1.344 Folding energies... MFEI: -40.728 AMFE: -0.711 GC content %: 57.285 | |
| Taestivum_Traes_6AL_4C35F955D.5 Traes_6AL_4C35F955D.5 PAC:31964019 |
Low | No | 1595 | Get ORF Coding potential... Type: noncoding Potential: -0.987 Folding energies... MFEI: -38.784 AMFE: -0.690 GC content %: 56.176 | |
| Taestivum_Traes_6AL_4C35F955D.6 Traes_6AL_4C35F955D.6 PAC:31964020 |
Low | No | 1568 | Get ORF Coding potential... Type: noncoding Potential: -0.759 Folding energies... MFEI: -38.941 AMFE: -0.697 GC content %: 55.867 | |
| Taestivum_Traes_6AL_4C35F955D.7 Traes_6AL_4C35F955D.7 PAC:31964022 |
Low | No | 1007 | Get ORF Coding potential... Type: noncoding Potential: -1.067 Folding energies... MFEI: -34.260 AMFE: -0.691 GC content %: 49.553 | |
| Taestivum_Traes_6AL_4C35F955D.8 Traes_6AL_4C35F955D.8 PAC:31964023 |
Low | No | 1466 | Get ORF Coding potential... Type: noncoding Potential: -1.011 Folding energies... MFEI: -39.986 AMFE: -0.702 GC content %: 56.958 | |
| Taestivum_Traes_6AL_4C35F955D.9 Traes_6AL_4C35F955D.9 PAC:31964024 |
Low | No | 772 | Get ORF Coding potential... Type: noncoding Potential: -1.095 Folding energies... MFEI: -37.060 AMFE: -0.698 GC content %: 53.109 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
