GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Taestivum_Traes_6AL_55FAE0BC8 Traes_6AL_55FAE0BC8	ta_iwgsc_6al_v1_5774776	4	739	Phytozome	v2.2	Triticum_aestivum	Coding? Yes

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Taestivum_Traes_6AL_55FAE0BC8.1 Traes_6AL_55FAE0BC8.1 PAC:31874938	Low	Yes	627		Get ORF Coding potential... Type: noncoding Potential: -0.829 Folding energies... MFEI: -43.907 AMFE: -0.701 GC content %: 62.679
Taestivum_Traes_6AL_55FAE0BC8.3 Traes_6AL_55FAE0BC8.3 PAC:31874940	Low	Yes	566		Get ORF Coding potential... Type: noncoding Potential: -0.988 Folding energies... MFEI: -46.042 AMFE: -0.704 GC content %: 65.371

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).