GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Taestivum_Traes_6AL_59D3F4597 Traes_6AL_59D3F4597	ta_iwgsc_6al_v1_5764535	4718	7068	Phytozome	v2.2	Triticum_aestivum	Coding? Yes

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Taestivum_Traes_6AL_59D3F4597.2 Traes_6AL_59D3F4597.2 PAC:31946914	Low	No	861		Get ORF Coding potential... Type: noncoding Potential: -0.662 Folding energies... MFEI: -34.030 AMFE: -0.677 GC content %: 50.290
Taestivum_Traes_6AL_59D3F4597.3 Traes_6AL_59D3F4597.3 PAC:31946913	Low	No	808		Get ORF Coding potential... Type: noncoding Potential: -0.654 Folding energies... MFEI: -30.829 AMFE: -0.657 GC content %: 46.906

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).