Gene
Taestivum Traes 6AL 761E06A62
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
|---|---|---|---|---|---|---|---|
| Taestivum_Traes_6AL_761E06A62 Traes_6AL_761E06A62 |
ta_iwgsc_6al_v1_5814969 | 1618 | 6815 | Phytozome | v2.2 | Triticum_aestivum | Coding? Yes |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
|---|---|---|---|---|---|
| Taestivum_Traes_6AL_761E06A62.5 Traes_6AL_761E06A62.5 PAC:31857437 |
High | No | 641 | Get ORF Coding potential... Type: noncoding Potential: -0.979 Folding energies... MFEI: -29.438 AMFE: -0.637 GC content %: 46.178 | |
| Taestivum_Traes_6AL_761E06A62.6 Traes_6AL_761E06A62.6 PAC:31857438 |
High | No | 483 | Get ORF Coding potential... Type: noncoding Potential: -1.316 Folding energies... MFEI: -30.186 AMFE: -0.610 GC content %: 49.482 | |
| Taestivum_Traes_6AL_761E06A62.7 Traes_6AL_761E06A62.7 PAC:31857436 |
High | No | 1021 | Get ORF Coding potential... Type: noncoding Potential: -0.742 Folding energies... MFEI: -26.905 AMFE: -0.630 GC content %: 42.703 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
