GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Taestivum_Traes_6AL_7E0CFDC3C Traes_6AL_7E0CFDC3C	ta_iwgsc_6al_v1_5772417	6003	13933	Phytozome	v2.2	Triticum_aestivum	Coding? Yes

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Taestivum_Traes_6AL_7E0CFDC3C.1 Traes_6AL_7E0CFDC3C.1 PAC:31766607	Low	No	1484		Get ORF Coding potential... Type: noncoding Potential: -0.218 Folding energies... MFEI: -39.953 AMFE: -0.708 GC content %: 56.469
Taestivum_Traes_6AL_7E0CFDC3C.2 Traes_6AL_7E0CFDC3C.2 PAC:31766603	Low	No	1281		Get ORF Coding potential... Type: noncoding Potential: -0.175 Folding energies... MFEI: -40.164 AMFE: -0.697 GC content %: 57.611
Taestivum_Traes_6AL_7E0CFDC3C.3 Traes_6AL_7E0CFDC3C.3 PAC:31766604	Low	No	1563		Get ORF Coding potential... Type: noncoding Potential: -0.133 Folding energies... MFEI: -40.499 AMFE: -0.710 GC content %: 57.070
Taestivum_Traes_6AL_7E0CFDC3C.5 Traes_6AL_7E0CFDC3C.5 PAC:31766605	Low	No	1575		Get ORF Coding potential... Type: noncoding Potential: -0.225 Folding energies... MFEI: -40.235 AMFE: -0.708 GC content %: 56.825
Taestivum_Traes_6AL_7E0CFDC3C.6 Traes_6AL_7E0CFDC3C.6 PAC:31766608	High	No	682		Get ORF Coding potential... Type: noncoding Potential: -1.380 Folding energies... MFEI: -27.082 AMFE: -0.596 GC content %: 45.455

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).