Gene
Taestivum Traes 6AL 8894386AA
From GreeNC
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
|---|---|---|---|---|---|---|---|
| Taestivum_Traes_6AL_8894386AA Traes_6AL_8894386AA |
ta_iwgsc_6al_v1_5773573 | 2810 | 6659 | Phytozome | v2.2 | Triticum_aestivum | Coding? No |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
|---|---|---|---|---|---|
| Taestivum_Traes_6AL_8894386AA.1 Traes_6AL_8894386AA.1 PAC:31814731 |
Low | No | 1580 | Get ORF Coding potential... Type: noncoding Potential: -1.028 Folding energies... MFEI: -33.816 AMFE: -0.680 GC content %: 49.747 | |
| Taestivum_Traes_6AL_8894386AA.10 Traes_6AL_8894386AA.10 PAC:31814737 |
High | No | 1371 | Get ORF Coding potential... Type: noncoding Potential: -1.246 Folding energies... MFEI: -27.491 AMFE: -0.677 GC content %: 40.627 | |
| Taestivum_Traes_6AL_8894386AA.2 Traes_6AL_8894386AA.2 PAC:31814732 |
Low | No | 1085 | Get ORF Coding potential... Type: noncoding Potential: -0.997 Folding energies... MFEI: -37.843 AMFE: -0.701 GC content %: 54.009 | |
| Taestivum_Traes_6AL_8894386AA.3 Traes_6AL_8894386AA.3 PAC:31814733 |
Low | No | 1897 | Get ORF Coding potential... Type: noncoding Potential: -1.040 Folding energies... MFEI: -32.847 AMFE: -0.687 GC content %: 47.812 | |
| Taestivum_Traes_6AL_8894386AA.4 Traes_6AL_8894386AA.4 PAC:31814734 |
Low | No | 1500 | Get ORF Coding potential... Type: noncoding Potential: -1.024 Folding energies... MFEI: -34.647 AMFE: -0.680 GC content %: 50.933 | |
| Taestivum_Traes_6AL_8894386AA.5 Traes_6AL_8894386AA.5 PAC:31814735 |
Low | No | 1639 | Get ORF Coding potential... Type: noncoding Potential: -1.030 Folding energies... MFEI: -34.832 AMFE: -0.697 GC content %: 49.969 | |
| Taestivum_Traes_6AL_8894386AA.6 Traes_6AL_8894386AA.6 PAC:31814739 |
Low | No | 1894 | Get ORF Coding potential... Type: noncoding Potential: -1.039 Folding energies... MFEI: -33.273 AMFE: -0.686 GC content %: 48.469 | |
| Taestivum_Traes_6AL_8894386AA.7 Traes_6AL_8894386AA.7 PAC:31814740 |
Low | No | 1296 | Get ORF Coding potential... Type: noncoding Potential: -1.013 Folding energies... MFEI: -35.517 AMFE: -0.687 GC content %: 51.698 | |
| Taestivum_Traes_6AL_8894386AA.8 Traes_6AL_8894386AA.8 PAC:31814738 |
High | No | 927 | Get ORF Coding potential... Type: noncoding Potential: -1.210 Folding energies... MFEI: -29.191 AMFE: -0.667 GC content %: 43.797 | |
| Taestivum_Traes_6AL_8894386AA.9 Traes_6AL_8894386AA.9 PAC:31814736 |
High | No | 1621 | Get ORF Coding potential... Type: noncoding Potential: -1.098 Folding energies... MFEI: -28.550 AMFE: -0.686 GC content %: 41.641 |
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Taestivum_Traes_6AL_8894386AA.4 | RepBase (RepeatMasker) | 2014-01-31 | (CTG)n | |
| Taestivum_Traes_6AL_8894386AA.5 | RepBase (RepeatMasker) | 2014-01-31 | (CTG)n | |
| Taestivum_Traes_6AL_8894386AA.6 | RepBase (RepeatMasker) | 2014-01-31 | (CTG)n | |
| Taestivum_Traes_6AL_8894386AA.1 | RepBase (RepeatMasker) | 2014-01-31 | (CTG)n | |
| Taestivum_Traes_6AL_8894386AA.7 | RepBase (RepeatMasker) | 2014-01-31 | (CTG)n | |
| Taestivum_Traes_6AL_8894386AA.2 | RepBase (RepeatMasker) | 2014-01-31 | (CTG)n | |
| Taestivum_Traes_6AL_8894386AA.3 | RepBase (RepeatMasker) | 2014-01-31 | (CTG)n |
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
