GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Taestivum_Traes_6AL_9AFBFB453 Traes_6AL_9AFBFB453	ta_iwgsc_6al_v1_5777269	3940	4878	Phytozome	v2.2	Triticum_aestivum	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Taestivum_Traes_6AL_9AFBFB453.1 Traes_6AL_9AFBFB453.1 PAC:31970928	High	No	611		Get ORF Coding potential... Type: noncoding Potential: -0.982 Folding energies... MFEI: -22.390 AMFE: -0.545 GC content %: 41.080
Taestivum_Traes_6AL_9AFBFB453.2 Traes_6AL_9AFBFB453.2 PAC:31970927	High	No	760		Get ORF Coding potential... Type: noncoding Potential: -1.117 Folding energies... MFEI: -22.000 AMFE: -0.577 GC content %: 38.158

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).