GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Taestivum_Traes_6AL_9E02255CC Traes_6AL_9E02255CC	ta_iwgsc_6al_v1_5833653	10112	12257	Phytozome	v2.2	Triticum_aestivum	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Taestivum_Traes_6AL_9E02255CC.1 Traes_6AL_9E02255CC.1 PAC:31812506	High	No	585		Get ORF Coding potential... Type: noncoding Potential: -1.050 Folding energies... MFEI: -33.761 AMFE: -0.631 GC content %: 53.504
Taestivum_Traes_6AL_9E02255CC.2 Traes_6AL_9E02255CC.2 PAC:31812507	High	No	1046		Get ORF Coding potential... Type: noncoding Potential: -1.122 Folding energies... MFEI: -31.472 AMFE: -0.623 GC content %: 50.478

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).