Gene
Taestivum Traes 6AL AC74E1A75
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
|---|---|---|---|---|---|---|---|
| Taestivum_Traes_6AL_AC74E1A75 Traes_6AL_AC74E1A75 |
ta_iwgsc_6al_v1_5823725 | 1970 | 6120 | Phytozome | v2.2 | Triticum_aestivum | Coding? Yes |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
|---|---|---|---|---|---|
| Taestivum_Traes_6AL_AC74E1A75.17 Traes_6AL_AC74E1A75.17 PAC:31977318 |
High | No | 2240 | Get ORF Coding potential... Type: noncoding Potential: -1.159 Folding energies... MFEI: -31.295 AMFE: -0.687 GC content %: 45.536 | |
| Taestivum_Traes_6AL_AC74E1A75.18 Traes_6AL_AC74E1A75.18 PAC:31977319 |
High | No | 3092 | Get ORF Coding potential... Type: noncoding Potential: -1.214 Folding energies... MFEI: -29.140 AMFE: -0.677 GC content %: 43.014 | |
| Taestivum_Traes_6AL_AC74E1A75.21 Traes_6AL_AC74E1A75.21 PAC:31977326 |
High | No | 2516 | Get ORF Coding potential... Type: noncoding Potential: -1.205 Folding energies... MFEI: -30.187 AMFE: -0.667 GC content %: 45.270 | |
| Taestivum_Traes_6AL_AC74E1A75.22 Traes_6AL_AC74E1A75.22 PAC:31977322 |
High | No | 3646 | Get ORF Coding potential... Type: noncoding Potential: -1.113 Folding energies... MFEI: -28.513 AMFE: -0.682 GC content %: 41.799 | |
| Taestivum_Traes_6AL_AC74E1A75.23 Traes_6AL_AC74E1A75.23 PAC:31977324 |
High | No | 2035 | Get ORF Coding potential... Type: noncoding Potential: -1.193 Folding energies... MFEI: -30.270 AMFE: -0.671 GC content %: 45.111 | |
| Taestivum_Traes_6AL_AC74E1A75.24 Traes_6AL_AC74E1A75.24 PAC:31977328 |
High | No | 2904 | Get ORF Coding potential... Type: noncoding Potential: -1.106 Folding energies... MFEI: -29.125 AMFE: -0.688 GC content %: 42.355 | |
| Taestivum_Traes_6AL_AC74E1A75.25 Traes_6AL_AC74E1A75.25 PAC:31977323 |
High | No | 1987 | Get ORF Coding potential... Type: noncoding Potential: -1.192 Folding energies... MFEI: -31.646 AMFE: -0.648 GC content %: 48.817 | |
| Taestivum_Traes_6AL_AC74E1A75.31 Traes_6AL_AC74E1A75.31 PAC:31977330 |
High | No | 1850 | Get ORF Coding potential... Type: noncoding Potential: -1.188 Folding energies... MFEI: -32.530 AMFE: -0.664 GC content %: 48.973 | |
| Taestivum_Traes_6AL_AC74E1A75.33 Traes_6AL_AC74E1A75.33 PAC:31977334 |
High | No | 3100 | Get ORF Coding potential... Type: noncoding Potential: -1.108 Folding energies... MFEI: -28.877 AMFE: -0.684 GC content %: 42.194 | |
| Taestivum_Traes_6AL_AC74E1A75.34 Traes_6AL_AC74E1A75.34 PAC:31977335 |
High | No | 1596 | Get ORF Coding potential... Type: noncoding Potential: -1.177 Folding energies... MFEI: -25.783 AMFE: -0.685 GC content %: 37.657 | |
| Taestivum_Traes_6AL_AC74E1A75.35 Traes_6AL_AC74E1A75.35 PAC:31977336 |
High | No | 1302 | Get ORF Coding potential... Type: noncoding Potential: -1.108 Folding energies... MFEI: -24.716 AMFE: -0.686 GC content %: 36.022 | |
| Taestivum_Traes_6AL_AC74E1A75.36 Traes_6AL_AC74E1A75.36 PAC:31977337 |
High | No | 905 | Get ORF Coding potential... Type: noncoding Potential: -1.122 Folding energies... MFEI: -25.646 AMFE: -0.636 GC content %: 40.331 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
