Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
---|---|---|---|---|---|---|---|
Taestivum_Traes_6AL_B7E6E1DEA Traes_6AL_B7E6E1DEA |
ta_iwgsc_6al_v1_5799380 | 3520 | 5155 | Phytozome | v2.2 | Triticum_aestivum | Coding? No |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
---|---|---|---|---|---|
Taestivum_Traes_6AL_B7E6E1DEA.1 Traes_6AL_B7E6E1DEA.1 PAC:31791743 |
High | No | 240 | Get ORF Coding potential... Type: noncoding Potential: -0.760 Folding energies... MFEI: -38.833 AMFE: -0.586 GC content %: 66.250 | |
Taestivum_Traes_6AL_B7E6E1DEA.2 Traes_6AL_B7E6E1DEA.2 PAC:31791744 |
Low | No | 679 | Get ORF Coding potential... Type: noncoding Potential: -0.937 Folding energies... MFEI: -29.234 AMFE: -0.618 GC content %: 47.275 | |
Taestivum_Traes_6AL_B7E6E1DEA.3 Traes_6AL_B7E6E1DEA.3 PAC:31791745 |
High | No | 491 | Get ORF Coding potential... Type: noncoding Potential: -0.889 Folding energies... MFEI: -33.136 AMFE: -0.628 GC content %: 52.749 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Taestivum_Traes_6AL_B7E6E1DEA.2 | RepBase (RepeatMasker) | 2014-01-31 | Helitron-N5_SBi |