GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Taestivum_Traes_6AL_F4B491351 Traes_6AL_F4B491351	ta_iwgsc_6al_v1_5757625	10643	16386	Phytozome	v2.2	Triticum_aestivum	Coding? Yes

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Taestivum_Traes_6AL_F4B491351.10 Traes_6AL_F4B491351.10 PAC:32003681	Low	No	579		Get ORF Coding potential... Type: noncoding Potential: -0.381 Folding energies... MFEI: -27.893 AMFE: -0.649 GC content %: 43.005
Taestivum_Traes_6AL_F4B491351.9 Traes_6AL_F4B491351.9 PAC:32003680	Low	No	596		Get ORF Coding potential... Type: noncoding Potential: -0.177 Folding energies... MFEI: -28.658 AMFE: -0.670 GC content %: 42.785

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).