GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Taestivum_Traes_6AL_F7C7333CE Traes_6AL_F7C7333CE	ta_iwgsc_6al_v1_5787212	4	7426	Phytozome	v2.2	Triticum_aestivum	Coding? Yes

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Taestivum_Traes_6AL_F7C7333CE.10 Traes_6AL_F7C7333CE.10 PAC:32007785	High	No	1113		Get ORF Coding potential... Type: noncoding Potential: -1.243 Folding energies... MFEI: -26.235 AMFE: -0.629 GC content %: 41.689
Taestivum_Traes_6AL_F7C7333CE.15 Traes_6AL_F7C7333CE.15 PAC:32007791	High	No	338		Get ORF Coding potential... Type: noncoding Potential: -0.840 Folding energies... MFEI: -41.095 AMFE: -0.556 GC content %: 73.964
Taestivum_Traes_6AL_F7C7333CE.6 Traes_6AL_F7C7333CE.6 PAC:32007782	Low	No	1551		Get ORF Coding potential... Type: noncoding Potential: -1.212 Folding energies... MFEI: -26.937 AMFE: -0.641 GC content %: 42.037
Taestivum_Traes_6AL_F7C7333CE.8 Traes_6AL_F7C7333CE.8 PAC:32007783	Low	No	1121		Get ORF Coding potential... Type: noncoding Potential: -1.227 Folding energies... MFEI: -27.217 AMFE: -0.626 GC content %: 43.443

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).