GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Taestivum_Traes_6AL_FDB234090 Traes_6AL_FDB234090	ta_iwgsc_6al_v1_5791544	2734	3518	Phytozome	v2.2	Triticum_aestivum	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Taestivum_Traes_6AL_FDB234090.1 Traes_6AL_FDB234090.1 PAC:31926215	High	No	668		Get ORF Coding potential... Type: noncoding Potential: -0.609 Folding energies... MFEI: -38.638 AMFE: -0.617 GC content %: 62.575
Taestivum_Traes_6AL_FDB234090.2 Traes_6AL_FDB234090.2 PAC:31926213	High	No	618		Get ORF Coding potential... Type: noncoding Potential: -0.690 Folding energies... MFEI: -40.485 AMFE: -0.643 GC content %: 62.945
Taestivum_Traes_6AL_FDB234090.3 Traes_6AL_FDB234090.3 PAC:31926214	High	No	468		Get ORF Coding potential... Type: noncoding Potential: -0.947 Folding energies... MFEI: -40.534 AMFE: -0.637 GC content %: 63.675

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).