GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Taestivum_Traes_6AS_37D27137E Traes_6AS_37D27137E	ta_iwgsc_6as_v1_4405960	4	8212	Phytozome	v2.2	Triticum_aestivum	Coding? Yes

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Taestivum_Traes_6AS_37D27137E.19 Traes_6AS_37D27137E.19 PAC:31946903	High	No	1306		Get ORF Coding potential... Type: noncoding Potential: -1.130 Folding energies... MFEI: -28.951 AMFE: -0.647 GC content %: 44.717
Taestivum_Traes_6AS_37D27137E.20 Traes_6AS_37D27137E.20 PAC:31946902	High	No	1273		Get ORF Coding potential... Type: noncoding Potential: -1.127 Folding energies... MFEI: -27.494 AMFE: -0.645 GC content %: 42.655
Taestivum_Traes_6AS_37D27137E.22 Traes_6AS_37D27137E.22 PAC:31946905	High	No	677		Get ORF Coding potential... Type: noncoding Potential: -1.011 Folding energies... MFEI: -28.685 AMFE: -0.615 GC content %: 46.677

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).