Gene
Taestivum Traes 6AS 7076AC0D9
From GreeNC
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
|---|---|---|---|---|---|---|---|
| Taestivum_Traes_6AS_7076AC0D9 Traes_6AS_7076AC0D9 |
ta_iwgsc_6as_v1_1651908 | 61 | 10124 | Phytozome | v2.2 | Triticum_aestivum | Coding? Yes |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
|---|---|---|---|---|---|
| Taestivum_Traes_6AS_7076AC0D9.1 Traes_6AS_7076AC0D9.1 PAC:31786467 |
Low | No | 2013 | Get ORF Coding potential... Type: noncoding Potential: -0.069 Folding energies... MFEI: -26.503 AMFE: -0.647 GC content %: 40.934 | |
| Taestivum_Traes_6AS_7076AC0D9.13 Traes_6AS_7076AC0D9.13 PAC:31786466 |
Low | No | 1389 | Get ORF Coding potential... Type: noncoding Potential: -0.017 Folding energies... MFEI: -27.163 AMFE: -0.673 GC content %: 40.389 | |
| Taestivum_Traes_6AS_7076AC0D9.14 Traes_6AS_7076AC0D9.14 PAC:31786470 |
Low | No | 1830 | Get ORF Coding potential... Type: noncoding Potential: -0.154 Folding energies... MFEI: -25.962 AMFE: -0.684 GC content %: 37.978 | |
| Taestivum_Traes_6AS_7076AC0D9.15 Traes_6AS_7076AC0D9.15 PAC:31786471 |
Low | No | 1632 | Get ORF Coding potential... Type: noncoding Potential: -0.140 Folding energies... MFEI: -26.667 AMFE: -0.670 GC content %: 39.828 | |
| Taestivum_Traes_6AS_7076AC0D9.16 Traes_6AS_7076AC0D9.16 PAC:31786472 |
Low | No | 1594 | Get ORF Coding potential... Type: noncoding Potential: -1.205 Folding energies... MFEI: -25.790 AMFE: -0.686 GC content %: 37.578 | |
| Taestivum_Traes_6AS_7076AC0D9.17 Traes_6AS_7076AC0D9.17 PAC:31786473 |
Low | No | 1000 | Get ORF Coding potential... Type: noncoding Potential: -0.245 Folding energies... MFEI: -29.460 AMFE: -0.673 GC content %: 43.800 | |
| Taestivum_Traes_6AS_7076AC0D9.18 Traes_6AS_7076AC0D9.18 PAC:31786474 |
Low | No | 1486 | Get ORF Coding potential... Type: noncoding Potential: -0.302 Folding energies... MFEI: -25.606 AMFE: -0.668 GC content %: 38.358 | |
| Taestivum_Traes_6AS_7076AC0D9.19 Traes_6AS_7076AC0D9.19 PAC:31786459 |
Low | Yes | 1577 | Get ORF Coding potential... Type: noncoding Potential: -1.158 Folding energies... MFEI: -34.547 AMFE: -0.666 GC content %: 51.871 | |
| Taestivum_Traes_6AS_7076AC0D9.20 Traes_6AS_7076AC0D9.20 PAC:31786469 |
High | No | 481 | Get ORF Coding potential... Type: noncoding Potential: -1.289 Folding energies... MFEI: -19.647 AMFE: -0.587 GC content %: 33.472 | |
| Taestivum_Traes_6AS_7076AC0D9.4 Traes_6AS_7076AC0D9.4 PAC:31786457 |
High | No | 834 | Get ORF Coding potential... Type: noncoding Potential: -0.944 Folding energies... MFEI: -42.422 AMFE: -0.665 GC content %: 63.789 |
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Taestivum_Traes_6AS_7076AC0D9.19 | Rfam | 11.0 | MIR1122 | 6.0e-5 |
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
