GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Taestivum_Traes_6AS_9024FB1AE Traes_6AS_9024FB1AE	ta_iwgsc_6as_v1_4427075	1236	3902	Phytozome	v2.2	Triticum_aestivum	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Taestivum_Traes_6AS_9024FB1AE.1 Traes_6AS_9024FB1AE.1 PAC:31902801	High	No	1592		Get ORF Coding potential... Type: noncoding Potential: -0.752 Folding energies... MFEI: -40.170 AMFE: -0.665 GC content %: 60.364
Taestivum_Traes_6AS_9024FB1AE.2 Traes_6AS_9024FB1AE.2 PAC:31902803	High	No	992		Get ORF Coding potential... Type: noncoding Potential: -0.798 Folding energies... MFEI: -37.742 AMFE: -0.642 GC content %: 58.770
Taestivum_Traes_6AS_9024FB1AE.3 Traes_6AS_9024FB1AE.3 PAC:31902802	High	No	1270		Get ORF Coding potential... Type: noncoding Potential: -0.873 Folding energies... MFEI: -36.512 AMFE: -0.682 GC content %: 53.543

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).