GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Taestivum_Traes_6AS_90F08A231 Traes_6AS_90F08A231	ta_iwgsc_6as_v1_4373823	1809	7423	Phytozome	v2.2	Triticum_aestivum	Coding? Yes

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Taestivum_Traes_6AS_90F08A231.1 Traes_6AS_90F08A231.1 PAC:31837760	Low	No	525		Get ORF Coding potential... Type: noncoding Potential: -0.673 Folding energies... MFEI: -27.562 AMFE: -0.629 GC content %: 43.810
Taestivum_Traes_6AS_90F08A231.16 Traes_6AS_90F08A231.16 PAC:31837764	Low	No	1097		Get ORF Coding potential... Type: noncoding Potential: -0.068 Folding energies... MFEI: -27.347 AMFE: -0.654 GC content %: 41.841

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).