GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Taestivum_Traes_6AS_B585573E3 Traes_6AS_B585573E3	ta_iwgsc_6as_v1_4406192	12728	15920	Phytozome	v2.2	Triticum_aestivum	Coding? Yes

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Taestivum_Traes_6AS_B585573E3.1 Traes_6AS_B585573E3.1 PAC:31872298	High	No	754		Get ORF Coding potential... Type: noncoding Potential: -0.774 Folding energies... MFEI: -27.666 AMFE: -0.626 GC content %: 44.164
Taestivum_Traes_6AS_B585573E3.4 Traes_6AS_B585573E3.4 PAC:31872299	High	No	391		Get ORF Coding potential... Type: noncoding Potential: -0.984 Folding energies... MFEI: -18.082 AMFE: -0.512 GC content %: 35.294

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).