GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Taestivum_Traes_6AS_E389F9553 Traes_6AS_E389F9553	ta_iwgsc_6as_v1_4361762	3467	4569	Phytozome	v2.2	Triticum_aestivum	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Taestivum_Traes_6AS_E389F9553.1 Traes_6AS_E389F9553.1 PAC:31917598	High	No	932		Get ORF Coding potential... Type: noncoding Potential: -0.936 Folding energies... MFEI: -34.474 AMFE: -0.643 GC content %: 53.648
Taestivum_Traes_6AS_E389F9553.2 Traes_6AS_E389F9553.2 PAC:31917599	High	No	417		Get ORF Coding potential... Type: noncoding Potential: -0.757 Folding energies... MFEI: -40.647 AMFE: -0.623 GC content %: 65.228

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).