GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Taestivum_Traes_6AS_F0788D2C5 Traes_6AS_F0788D2C5	ta_iwgsc_6as_v1_2094749	4	987	Phytozome	v2.2	Triticum_aestivum	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Taestivum_Traes_6AS_F0788D2C5.1 Traes_6AS_F0788D2C5.1 PAC:31864192	High	No	984		Get ORF Coding potential... Type: noncoding Potential: -1.425 Folding energies... MFEI: -26.047 AMFE: -0.641 GC content %: 40.650
Taestivum_Traes_6AS_F0788D2C5.2 Traes_6AS_F0788D2C5.2 PAC:31864193	High	No	462		Get ORF Coding potential... Type: noncoding Potential: -1.307 Folding energies... MFEI: -26.364 AMFE: -0.594 GC content %: 44.372

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).