GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Taestivum_Traes_6BL_1716B0DA7 Traes_6BL_1716B0DA7	ta_iwgsc_6bl_v1_4270753	406	3431	Phytozome	v2.2	Triticum_aestivum	Coding? Yes

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Taestivum_Traes_6BL_1716B0DA7.2 Traes_6BL_1716B0DA7.2 PAC:32016027	High	No	904		Get ORF Coding potential... Type: noncoding Potential: -0.303 Folding energies... MFEI: -28.075 AMFE: -0.562 GC content %: 50.000
Taestivum_Traes_6BL_1716B0DA7.3 Traes_6BL_1716B0DA7.3 PAC:32016028	High	No	971		Get ORF Coding potential... Type: noncoding Potential: -0.858 Folding energies... MFEI: -26.529 AMFE: -0.618 GC content %: 42.945

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).