GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Taestivum_Traes_6BL_200FF9C7A Traes_6BL_200FF9C7A	ta_iwgsc_6bl_v1_4299098	1	391	Phytozome	v2.2	Triticum_aestivum	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Taestivum_Traes_6BL_200FF9C7A.1 Traes_6BL_200FF9C7A.1 PAC:31962161	High	No	391		Get ORF Coding potential... Type: noncoding Potential: -0.761 Folding energies... MFEI: -32.020 AMFE: -0.596 GC content %: 53.708
Taestivum_Traes_6BL_200FF9C7A.2 Traes_6BL_200FF9C7A.2 PAC:31962162	High	No	298		Get ORF Coding potential... Type: noncoding Potential: -0.745 Folding energies... MFEI: -31.443 AMFE: -0.578 GC content %: 54.362

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).